spateo.utils

Module Contents

Functions

copy_adata(→ anndata.AnnData)

wrapper for deep copy adata and log copy operation since it is memory intensive.

spateo.utils.copy_adata(adata: anndata.AnnData) → anndata.AnnData

wrapper for deep copy adata and log copy operation since it is memory intensive.

Parameters

adata

An adata object that will be deep copied.

logger

Whether to report logging info

Examples

>>> import dynamo as dyn
>>> adata = dyn.sample_data.hgForebrainGlutamatergic()
>>> original_adata = copy_adata(adata)
>>> # now after this statement, adata "points" to a new object, copy of the original
>>> adata = copy_adata(adata)
>>> adata.X[0, 1] = -999
>>> # original_adata unchanged
>>> print(original_adata.X[0, 1])
>>> # we can use adata = copy_adata(adata) inside a dynammo function when we want to create a adata copy
>>> # without worrying about changing the original copy.