spateo
#
Spatiotemporal modeling of spatial transcriptomics
Subpackages#
spateo.digitization
spateo.io
spateo.plotting
spateo.plotting.interactive
spateo.plotting.static
spateo.plotting.static.three_d_plot
spateo.plotting.static.agg
spateo.plotting.static.align
spateo.plotting.static.bbs
spateo.plotting.static.colorlabel
spateo.plotting.static.contour
spateo.plotting.static.dotplot
spateo.plotting.static.geo
spateo.plotting.static.glm
spateo.plotting.static.interactions
spateo.plotting.static.lisa
spateo.plotting.static.polarity
spateo.plotting.static.position
spateo.plotting.static.scatters
spateo.plotting.static.space
spateo.plotting.static.utils
spateo.preprocessing
spateo.segmentation
spateo.segmentation.external
spateo.segmentation.align
spateo.segmentation.benchmark
spateo.segmentation.bp
spateo.segmentation.density
spateo.segmentation.em
spateo.segmentation.icell
spateo.segmentation.label
spateo.segmentation.moran
spateo.segmentation.qc
spateo.segmentation.simulation
spateo.segmentation.utils
spateo.segmentation.vi
spateo.tdr
spateo.tdr.models
spateo.tdr.widgets
spateo.tdr.widgets.changes
spateo.tdr.widgets.clip
spateo.tdr.widgets.deep_interpolation
spateo.tdr.widgets.interpolation_nn
spateo.tdr.widgets.interpolations
spateo.tdr.widgets.morphogenesis
spateo.tdr.widgets.morphology
spateo.tdr.widgets.nn_losses
spateo.tdr.widgets.pick
spateo.tdr.widgets.slice
spateo.tdr.widgets.tree
spateo.tdr.widgets.utils
spateo.tdr.widgets.vtk_interpolate
spateo.tools
spateo.tools.ST_regression
spateo.tools.cluster
spateo.tools.spatial_impute
spateo.tools.architype
spateo.tools.cci_fdr
spateo.tools.cci_two_cluster
spateo.tools.cell_communication
spateo.tools.cluster_degs
spateo.tools.cluster_lasso
spateo.tools.coarse_align
spateo.tools.find_neighbors
spateo.tools.gene_expression_variance
spateo.tools.glm
spateo.tools.labels
spateo.tools.lisa
spateo.tools.live_wire
spateo.tools.paste
spateo.tools.roi
spateo.tools.spatial_degs
spateo.tools.spatial_regression_interpretation
spateo.tools.three_dims_align
spateo.tools.utils
Submodules#
Package Contents#
Functions#
A minimalistic version helper in the spirit of versioneer, that is able to run without build step using pkg_resources. |
Attributes#
- spateo.get_version(package: Union[pathlib.Path, str]) str #
Get the version of a package or module Pass a module path or package name. The former is recommended, since it also works for not yet installed packages. Supports getting the version from #. The directory name (as created by
setup.py sdist
) #. The output ofgit describe
#. The package metadata of an installed package(This is the only possibility when passing a name)
- Parameters
- package
package name or module path (
…/module.py
or…/module/__init__.py
)