spateo.plotting.static.contour#
Written by @Jinerhal, adapted by @Xiaojieqiu.
Module Contents#
Functions#
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Generate an image with contours of each spatial domains. |
- spateo.plotting.static.contour.spatial_domains(adata: anndata.AnnData, bin_size: Optional[int] = None, spatial_key: str = 'spatial', label_key: str = 'cluster_img_label', plot_size=(3, 3), save_img='spatial_domains.png')[source]#
Generate an image with contours of each spatial domains.
- Parameters
- adata
The adata object used to create the image.
- bin_size
The size of the binning. Default to None.
- spatial_key
The key name of the spatial coordinates. Default to “spatial”.
- label_key
The key name of the image label values. Default to “cluster_img_label”.
- plot_size
figsize for showing the image.
- save_img
path to saving image file.